The solution structure of a class II major histocompatibility complex superantigen binding domain

MJ Jablonsky, PS Subramaniam, HM Johnson… - Biochemical and …, 1997 - Elsevier
MJ Jablonsky, PS Subramaniam, HM Johnson, JK Russell, NR Krishna
Biochemical and biophysical research communications, 1997Elsevier
We have used 600 MHz1H NMR spectroscopy data to determine the solution structure of a
31-residue domain of a murine class II major histocompatibility (MHC) protein. This domain, I-
Aβb-(60-90), binds to the superantigen staphylococcal enterotoxin A. Distance geometry
and dynamical simulated annealing calculations were performed using NOESY-and COSY-
deduced constraints. I-Aβb-(60-90), which is mostly α-helical, is more similar to the
corresponding region of the class II MHC protein HLA-DR1 than to the class I MHC protein …
We have used 600 MHz1H NMR spectroscopy data to determine the solution structure of a 31-residue domain of a murine class II major histocompatibility (MHC) protein. This domain, I-Aβb-(60-90), binds to the superantigen staphylococcal enterotoxin A. Distance geometry and dynamical simulated annealing calculations were performed using NOESY- and COSY-deduced constraints. I-Aβb-(60-90), which is mostly α-helical, is more similar to the corresponding region of the class II MHC protein HLA-DR1 than to the class I MHC protein HLA-A2. Arg-72 and Arg-80 lie on the same side of the helix and face away from the antigenic peptide binding groove. His-81, implicated in both superantigen and peptide binding, is located midway between the surface defined by Arg-72/Arg-80 and residues that define the inside of the peptide binding groove, allowing for its participation in both types of binding.
Elsevier
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